Package: bennu 0.3.1

bennu: Bayesian Estimation of Naloxone Kit Number Under-Reporting

Bayesian model and associated tools for generating estimates of total naloxone kit numbers distributed and used from naloxone kit orders data. Provides functions for generating simulated data of naloxone kit use and functions for generating samples from the posterior.

Authors:Mike Irvine [aut, cre, cph], Samantha Bardwell [ctb], Andrew Johnson [ctb]

bennu_0.3.1.tar.gz
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bennu_0.3.1.tar.gz(r-4.7-arm64)bennu_0.3.1.tar.gz(r-4.7-x86_64)bennu_0.3.1.tar.gz(r-4.6-arm64)bennu_0.3.1.tar.gz(r-4.6-x86_64)
bennu_0.3.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
bennu/json (API)

# Install 'bennu' in R:

install.packages('bennu', repos = c('https://sempwn.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/sempwn/bennu/issues

Pkgdown/docs site:https://sempwn.github.io

Uses libs:

onetbb– Parallelism library for C++
c++– GNU Standard C++ Library v3

Datasets:

experimental_validation_data - Experimental validation results
missing_data_validation - Missing data experimental validation results

On CRAN:

bayesian-data-analysis naloxone stan onetbb cpp

4.78 score 4 stars 15 scripts 432 downloads 7 exports 61 dependencies

Last updated from:44e3cee418. Checks:14 OK. Indexed: yes.

Target	Result	Time
linux-devel-arm64	OK	214
linux-devel-x86_64	OK	209
source / vignettes	OK	410
linux-release-arm64	OK	243
linux-release-x86_64	OK	272
macos-release-arm64	OK	225
macos-release-x86_64	OK	465
macos-oldrel-arm64	OK	361
macos-oldrel-x86_64	OK	638
windows-devel-arm64	OK	444
windows-devel-x86_64	OK	315
windows-release-x86_64	OK	189
windows-oldrel-x86_64	OK	262
wasm-release	OK	152

Exports:%>%est_naloxone est_naloxone_vec generate_model_data kit_summary_table model_random_walk_data plot_kit_use

Dependencies:abind arrayhelpers backports BH callr checkmate cli coda cpp11 desc distributional dplyr farver generics ggdist ggplot2 glue gridExtra gtable inline isoband labeling lattice lifecycle loo magrittr matrixStats numDeriv otel pillar pkgbuild pkgconfig posterior processx ps purrr quadprog QuickJSR R6 RColorBrewer Rcpp RcppEigen RcppParallel rlang rstan rstantools S7 scales StanHeaders stringi stringr svUnit tensorA tibble tidybayes tidyr tidyselect utf8 vctrs viridisLite withr

Simulation Validation Experiments

Simulated data inference | Missing data inference

Rendered fromsimulation_validation_experiments.Rmdusingknitr::rmarkdown

Last update: 2024-04-19
Started: 2024-04-19

Introduction

Incorporating different priors | Random walk of order 2 model | fit missing distribution data | Change scale of data

Rendered fromIntroduction.Rmdusingknitr::rmarkdown

Last update: 2024-03-14
Started: 2023-01-03

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
The 'bennu' package.	bennu-package bennu
Run Bayesian estimation of naloxone number under-reporting	est_naloxone
Run Bayesian estimation of naloxone number under-reporting	est_naloxone_vec
Experimental validation results	experimental_validation_data
generate model data for testing purposes	generate_model_data
Summarize model fit	kit_summary_table
Missing data experimental validation results	missing_data_validation
generate model data for testing purposes	model_random_walk_data
Plot of probability of naloxone kit use	plot_kit_use