Package: bennu 0.3.0.9000

bennu: Bayesian Estimation of Naloxone Kit Number Under-Reporting

Bayesian model and associated tools for generating estimates of total naloxone kit numbers distributed and used from naloxone kit orders data. Provides functions for generating simulated data of naloxone kit use and functions for generating samples from the posterior.

Authors:Mike Irvine [aut, cre, cph], Samantha Bardwell [ctb], Andrew Johnson [ctb]

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bennu.pdf |bennu.html✨
bennu/json (API)
NEWS

# Install 'bennu' in R:

install.packages('bennu', repos = c('https://sempwn.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/sempwn/bennu/issues

Pkgdown site:https://sempwn.github.io

Uses libs:

c++– GNU Standard C++ Library v3

Datasets:

experimental_validation_data - Experimental validation results
missing_data_validation - Missing data experimental validation results

On CRAN:

bayesian-data-analysis naloxone stan cpp

4.52 score 1 stars 11 scripts 237 downloads 7 exports 66 dependencies

Last updated 10 months agofrom:8b7fd8aea8. Checks:1 OK, 8 NOTE. Indexed: yes.

Target	Result	Latest binary
Doc / Vignettes	OK	Jan 24 2025
R-4.5-win-x86_64	NOTE	Jan 24 2025
R-4.5-linux-x86_64	NOTE	Jan 24 2025
R-4.4-win-x86_64	NOTE	Jan 24 2025
R-4.4-mac-x86_64	NOTE	Jan 24 2025
R-4.4-mac-aarch64	NOTE	Jan 24 2025
R-4.3-win-x86_64	NOTE	Jan 24 2025
R-4.3-mac-x86_64	NOTE	Jan 24 2025
R-4.3-mac-aarch64	NOTE	Jan 24 2025

Exports:%>%est_naloxone est_naloxone_vec generate_model_data kit_summary_table model_random_walk_data plot_kit_use

Dependencies:abind arrayhelpers backports BH callr checkmate cli coda colorspace cpp11 desc distributional dplyr fansi farver generics ggdist ggplot2 glue gridExtra gtable inline isoband labeling lattice lifecycle loo magrittr MASS Matrix matrixStats mgcv munsell nlme numDeriv pillar pkgbuild pkgconfig posterior processx ps purrr quadprog QuickJSR R6 RColorBrewer Rcpp RcppEigen RcppParallel rlang rstan rstantools scales StanHeaders stringi stringr svUnit tensorA tibble tidybayes tidyr tidyselect utf8 vctrs viridisLite withr

Introduction

Rendered fromIntroduction.Rmdusingknitr::rmarkdownon Jan 24 2025.

Last update: 2024-03-14
Started: 2023-01-03

Simulation Validation Experiments

Rendered fromsimulation_validation_experiments.Rmdusingknitr::rmarkdownon Jan 24 2025.

Last update: 2024-04-19
Started: 2024-04-19

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
The 'bennu' package.	bennu-package bennu
Run Bayesian estimation of naloxone number under-reporting	est_naloxone
Run Bayesian estimation of naloxone number under-reporting	est_naloxone_vec
Experimental validation results	experimental_validation_data
generate model data for testing purposes	generate_model_data
Summarize model fit	kit_summary_table
Missing data experimental validation results	missing_data_validation
generate model data for testing purposes	model_random_walk_data
Plot of probability of naloxone kit use	plot_kit_use